Information for 1-YGCAGCMCCGGCT (Motif 2)

A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T
Reverse Opposite:
C G T A C T A G A T G C A G T C C T A G A C T G A C T G A C T G A G T C A C G T A C T G A T G C C T A G
p-value:1e-11
log p-value:-2.688e+01
Information Content per bp:1.821
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif24.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets53.4 +/- 28.6bp
Average Position of motif in Background47.9 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:YGCAGCMCCGGCT
--CAGCC------
 A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

POL003.1_GC-box/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:YGCAGCMCCGGCT---
--NAGCCCCGCCCCCN
 A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:YGCAGCMCCGGCT-
----GCTCGGSCTC
 A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C

Sp1(Zf)/Promoter/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:YGCAGCMCCGGCT--
---GGCCCCGCCCCC
 A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:YGCAGCMCCGGCT
CACAGN-------
 A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:YGCAGCMCCGGCT
CGCAGCTGCG---
 A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:YGCAGCMCCGGCT
----GCTCCG---
 A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

SP2/MA0516.1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:YGCAGCMCCGGCT------
----GCCCCGCCCCCTCCC
 A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

PB0202.1_Zfp410_2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---YGCAGCMCCGGCT-
TCACCCCGCCCCAAATT
 A C G T A C G T A C G T A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T A C G T
A G C T G A T C G T C A A G T C G A T C A G T C A G T C A C T G T G A C A G T C T G A C A T G C C G A T G C T A G T C A G A C T G C A T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:YGCAGCMCCGGCT
---TGCCCAGNHW
 A G T C A T C G A G T C C G T A A C T G A G T C T G A C A G T C A G T C A C T G T A C G A G T C A C G T
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A