Information for 4-TGCCATAAAC (Motif 9)

A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C
Reverse Opposite:
A T C G A C G T A G C T A C G T C T G A A C G T A C T G A C T G A G T C C G T A
p-value:1e-8
log p-value:-1.860e+01
Information Content per bp:1.873
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.98%
Number of Background Sequences with motif69.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets57.4 +/- 29.7bp
Average Position of motif in Background54.8 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TGCCATAAAC
AAGCCATAAAA
 A C G T A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TGCCATAAAC-
-GTCATAAAAN
 A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TGCCATAAAC
-GCAATAAAA
 A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGCCATAAAC--
NGYCATAAAWCH
 A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGCCATAAAC-
GGTAATAAAAA
 A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGCCATAAAC--
GGCCATAAATCA
 A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGCCATAAAC---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGCCATAAAC-----
ACGGCCATAAAATTAAT
 A C G T A C G T A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGCCATAAAC----
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxc9/MA0485.1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGCCATAAAC---
GGCCATAAATCAC
 A C G T A C T G A G T C A G T C G T C A A G C T C G T A C T G A C G T A T A G C A C G T A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C