Information for 7-TARGWCACTT (Motif 25)

A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T
Reverse Opposite:
G T C A C G T A A C T G A C G T A C T G C G T A A G T C A G C T A C G T C G T A
p-value:1e-7
log p-value:-1.717e+01
Information Content per bp:1.892
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif22.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets34.4 +/- 18.2bp
Average Position of motif in Background61.9 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TARGWCACTT
AAGGTCAC--
 A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TARGWCACTT--
---ACCACTTAA
 A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

PH0113.1_Nkx2-4/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TARGWCACTT------
TAAGCCACTTGAAATT
 A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TARGWCACTT------
TAAGCCACTTGAAATT
 A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TARGWCACTT
AAYTAGGTCA---
 A C G T A C G T A C G T A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TARGWCACTT---
---ACCACTTGAA
 A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TARGWCACTT------
TAAGCCACTTAACATT
 A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TARGWCACTT--
--MRSCACTYAA
 A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TARGWCACTT---
----CCACTTGAA
 A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TARGWCACTT------
CTTAACCACTTAAGGAT
 A C G T A C G T C G T A C T G A A C T G C G A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T