Information for 3-GGGTGACTGCCCG (Motif 9)

C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G
Reverse Opposite:
G T A C T C A G A C T G C T A G A T G C C G T A A T C G C G A T A T G C C G T A A T G C T A G C A G T C
p-value:1e-8
log p-value:-1.966e+01
Information Content per bp:1.718
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif131.0
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets56.7 +/- 24.7bp
Average Position of motif in Background48.8 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GGGTGACTGCCCG--
------CTGCCCGCA
 C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGGTGACTGCCCG
TGGCAGNCTGCCAG
 A C G T C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGGTGACTGCCCG
GGGGGAATCCCC-
 C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGGTGACTGCCCG
NAGGTCANTGACCT
 A C G T C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGGTGACTGCCCG-
NNGCGTGTGTGCNGCN
 A C G T A C G T C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GGGTGACTGCCCG--
------ATGCCCACC
 C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGGTGACTGCCCG
GGGGGTGTGTCC-
 C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G
T C A G C A T G C A T G A C T G A C T G A G C T A C T G A C G T A C T G C A G T A T G C A G T C A C G T

NRF1/MA0506.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGGTGACTGCCCG
--GCGCCTGCGCA
 C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G
A C G T A C G T T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGGTGACTGCCCG-----
--GGGTGTGCCCAAAAGG
 C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGGTGACTGCCCG
GTCATGCHTGRCTGS---
 A C G T A C G T A C G T A C G T A C G T C T A G A T C G A T C G C G A T A T C G G C T A A T G C A C G T A T C G A G T C T G A C A G T C A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T