Information for 5-TGGGAKCCGCCCT (Motif 12)

A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A T C G A G T C A T C G A C T G T G C A A C G T A T G C A G T C A G T C C G T A
p-value:1e-7
log p-value:-1.793e+01
Information Content per bp:1.852
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.5 +/- 19.0bp
Average Position of motif in Background44.0 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGGAKCCGCCCT
CTGGCAGNCTGCCA
 A C G T A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

POL011.1_XCPE1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TGGGAKCCGCCCT
--GGTCCCGCCC-
 A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T
A C G T A C G T A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGGGAKCCGCCCT----
AAGCATACGCCCAACTT
 A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGGAKCCGCCCT-
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Zfx/MA0146.2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGGGAKCCGCCCT-
GGGGCCGAGGCCTG
 A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGGAKCCGCCCT
GGGGATTCCCCC-
 A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGGGAKCCGCCCT-
TGGCACCATGCCAA
 A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TGGGAKCCGCCCT-
--GGCCCCGCCCCC
 A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T A C G T
A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.54
Offset:7
Orientation:forward strand
Alignment:TGGGAKCCGCCCT--
-------AGGCCTAG
 A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TGGGAKCCGCCCT
CSTGGGAAAD-----
 A C G T A C G T A C G T A C T G A C T G A T C G C G T A A C G T T A G C A T G C A C T G A T G C A G T C A G T C A C G T
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T