Information for 2-GGTGGCATCC (Motif 9)

A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C
Reverse Opposite:
T C A G C T A G G C T A A C G T A T C G T A G C T A G C T G C A A G T C T G A C
p-value:1e-9
log p-value:-2.207e+01
Information Content per bp:1.657
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif8.70%
Number of Background Sequences with motif1778.0
Percentage of Background Sequences with motif3.75%
Average Position of motif in Targets51.3 +/- 27.3bp
Average Position of motif in Background49.7 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCATCC
GGTTGGCAT--
 A C G T A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCATCC-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PH0164.1_Six4/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCATCC--
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A C G T A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCATCC
NGTGGGCAT--
 A C G T A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCATCC
AGGTGTCA---
 A C G T A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTGGCATCC
NTTGGCANN-
 A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCATCC
ARNTGACA---
 A C G T A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGTGGCATCC
VBTGWCAGCB
 A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGTGGCATCC--
GGGGGAATCCCC
 A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C A C G T A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGTGGCATCC
-TTGGCA---
 A C T G T C A G A C G T A T C G A T C G T A G C T G C A C G A T G A T C A G T C
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T