p-value: | 1e-6 |
log p-value: | -1.413e+01 |
Information Content per bp: | 1.946 |
Number of Target Sequences with motif | 3.0 |
Percentage of Target Sequences with motif | 0.38% |
Number of Background Sequences with motif | 1.9 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 53.5 +/- 23.3bp |
Average Position of motif in Background | 32.2 +/- 12.6bp |
Strand Bias (log2 ratio + to - strand density) | 1.6 |
Multiplicity (# of sites on avg that occur together) | 1.33 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
PB0153.1_Nr2f2_2/Jaspar
Match Rank: | 1 |
Score: | 0.59 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | GCACCCCGGTCAC--- CGCGCCGGGTCACGTA |
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REST/MA0138.2/Jaspar
Match Rank: | 2 |
Score: | 0.57 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----GCACCCCGGTCAC---- TTCAGCACCATGGACAGCGCC |
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REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer
Match Rank: | 3 |
Score: | 0.56 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---GCACCCCGGTCAC---- TCAGCACCATGGACAGCTCC |
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MF0004.1_Nuclear_Receptor_class/Jaspar
Match Rank: | 4 |
Score: | 0.55 |
Offset: | 6 |
Orientation: | forward strand |
Alignment: | GCACCCCGGTCAC ------AGGTCA- |
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RORA/MA0071.1/Jaspar
Match Rank: | 5 |
Score: | 0.55 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | GCACCCCGGTCAC --ATCAAGGTCA- |
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E-box(bHLH)/Promoter/Homer
Match Rank: | 6 |
Score: | 0.54 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | GCACCCCGGTCAC---- -----CCGGTCACGTGA |
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RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
Match Rank: | 7 |
Score: | 0.54 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | GCACCCCGGTCAC --AAYTAGGTCA- |
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PKNOX2/MA0783.1/Jaspar
Match Rank: | 8 |
Score: | 0.54 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | GCACCCCGGTCAC TGACACCTGTCA- |
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Pax2/MA0067.1/Jaspar
Match Rank: | 9 |
Score: | 0.53 |
Offset: | 7 |
Orientation: | forward strand |
Alignment: | GCACCCCGGTCAC-- -------AGTCACGC |
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PB0157.1_Rara_2/Jaspar
Match Rank: | 10 |
Score: | 0.53 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | GCACCCCGGTCAC--- AGAGCGGGGTCAAGTA |
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