| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-4 | -9.252e+00 | 0.0349 | 92.0 | 14.42% | 3986.5 | 9.72% | motif file (matrix) |
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| 2 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-3 | -8.131e+00 | 0.0536 | 116.0 | 18.18% | 5453.6 | 13.29% | motif file (matrix) |
svg |
| 3 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-3 | -7.880e+00 | 0.0536 | 131.0 | 20.53% | 6344.0 | 15.46% | motif file (matrix) |
svg |
| 4 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-3 | -7.413e+00 | 0.0549 | 83.0 | 13.01% | 3718.5 | 9.06% | motif file (matrix) |
svg |
| 5 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.894e+00 | 0.0738 | 47.0 | 7.37% | 1868.8 | 4.55% | motif file (matrix) |
svg |
| 6 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.643e+00 | 0.2149 | 49.0 | 7.68% | 2099.1 | 5.12% | motif file (matrix) |
svg |
| 7 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.507e+00 | 0.2149 | 32.0 | 5.02% | 1235.8 | 3.01% | motif file (matrix) |
svg |
| 8 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.983e+00 | 0.3118 | 42.0 | 6.58% | 1802.2 | 4.39% | motif file (matrix) |
svg |
| 9 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.830e+00 | 0.3229 | 48.0 | 7.52% | 2141.3 | 5.22% | motif file (matrix) |
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| 10 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-2 | -4.642e+00 | 0.3510 | 58.0 | 9.09% | 2714.6 | 6.62% | motif file (matrix) |
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