Information for 1-AAGGCAAGGC (Motif 8)

T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C
Reverse Opposite:
T A C G G A T C G T A C A G C T A G C T A T C G A G T C A G T C G C A T A G C T
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.682
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif13.32%
Number of Background Sequences with motif2303.2
Percentage of Background Sequences with motif5.61%
Average Position of motif in Targets47.0 +/- 23.6bp
Average Position of motif in Background48.7 +/- 35.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:AAGGCAAGGC-
AAGGCAAGTGT
 T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGGCAAGGC
AAAAGTCAA---
 A C G T A C G T T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGGCAAGGC---
CAAAGGCGTGGCCAG
 A C G T A C G T T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C A C G T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGGCAAGGC
CAAGGHCANV-
 A C G T T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGGCAAGGC-
CAGGTAAGTAT
 T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AAGGCAAGGC
AAGTTCAAGGTCAGC-
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAGGCAAGGC
BTCAAGGTCA---
 A C G T A C G T A C G T T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AAGGCAAGGC
AAAACAATGG
 T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAGGCAAGGC
NTCAAGGTCA---
 A C G T A C G T A C G T T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAGGCAAGGC--
AGGTCAAGGTCA
 T C G A C G T A C T A G T C A G T A G C T C G A T C G A C A T G C T A G A T G C A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A