Information for 8-CTCTGCAGGGCACGGY (Motif 11)

A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
Reverse Opposite:
C T A G G T A C G T A C C T A G A C G T A C T G G T A C A G T C A G T C A C G T A C T G A T G C C G T A A C T G C T G A A C T G
p-value:1e-11
log p-value:-2.745e+01
Information Content per bp:1.846
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.8 +/- 18.1bp
Average Position of motif in Background68.0 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGCAGGGCACGGY
DCHCAGCAGGRGGCC--
 A C G T A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGCAGGGCACGGY
DCTCAGCAGG-------
 A C G T A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTCTGCAGGGCACGGY
CACAGCAGGGGG----
 A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCTGCAGGGCACGGY
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTCTGCAGGGCACGGY
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTCTGCAGGGCACGGY
GAGCACAGCAGGACA----
 A C G T A C G T A C G T A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CTCTGCAGGGCACGGY
AATCGCACTGCATTCCG----
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CTCTGCAGGGCACGGY
----NGTGGGCAT---
 A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CTCTGCAGGGCACGGY
-----AAGGTCAC---
 A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTCTGCAGGGCACGGY
---TCAAGGTCAN---
 A G T C A G C T A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G A G T C C G T A A G T C A C T G A C T G A G C T
A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T