Information for 4-VTATTTTAAACHCAGG (Motif 12)

T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G
Reverse Opposite:
A G T C A G T C A C G T A C T G C A T G A C T G A C G T A C G T A C G T G T C A C G T A G T C A C G T A C G A T C G T A A C T G
p-value:1e-8
log p-value:-1.912e+01
Information Content per bp:1.818
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 28.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:VTATTTTAAACHCAGG
---TTTGAAACCG---
 T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-VTATTTTAAACHCAGG
GCTATTTTTAGC-----
 A C G T T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C A C G T A C G T A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--VTATTTTAAACHCAGG
CCGTATTATAAACAA---
 A C G T A C G T T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--VTATTTTAAACHCAGG
TTCTATTTTTAGNNN---
 A C G T A C G T T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:VTATTTTAAACHCAGG
---ATTTGAATT----
 T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-VTATTTTAAACHCAGG
KCTATTTTTRGH-----
 A C G T T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G
C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C A C G T A C G T A C G T A C G T A C G T

PB0019.1_Foxl1_1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:VTATTTTAAACHCAGG-
TAAATGTAAACAAAGGT
 T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G A C G T
C G A T C G T A C G T A C G T A G C A T C T A G C G A T G T C A C G T A C T G A A G T C C G T A G C T A C G T A T A C G T C A G A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:VTATTTTAAACHCAGG----
---ATAAGAACAAAGGACTA
 T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:VTATTTTAAACHCAGG
CTATTTTTGG------
 T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G
A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:VTATTTTAAACHCAGG--
--AAAGTAAACAAAAATT
 T A G C A C G T C G T A A C G T A C G T A C G T A C G T G T C A C G T A C G T A A G T C G A T C G T A C C G T A A C T G C T A G A C G T A C G T
A C G T A C G T G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T