Information for 11-GTGACRGRCA (Motif 15)

A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A
Reverse Opposite:
A C G T A C T G A G T C G T A C G A T C A C T G C A G T A G T C C G T A A T G C
p-value:1e-5
log p-value:-1.249e+01
Information Content per bp:1.762
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.45%
Number of Background Sequences with motif361.7
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets47.1 +/- 25.5bp
Average Position of motif in Background47.6 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GTGACRGRCA
AGGTGHCAGACA
 A C G T A C G T A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GTGACRGRCA-
AGGTGNCAGACAG
 A C G T A C G T A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTGACRGRCA--
BTGABTGACAGS
 A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A A C G T A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTGACRGRCA
VBTGWCAGCB-
 A C G T A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GTGACRGRCA
NCGTGACN----
 A C G T A C G T A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTGACRGRCA
TTGACAGG--
 A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTGACRGRCA--
NTGATTGACAGN
 A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Atf1/MA0604.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTGACRGRCA
ATGACGTA--
 A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A
T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTGACRGRCA
TTGACAG---
 A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTGACRGRCA
TGAGTGACAGSC-
 A C G T A C G T A C G T A T C G A C G T A C T G G T C A A G T C C T A G A C T G C T A G A G T C G T C A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T