Information for 2-TGGCCACTAGAGG (Motif 2)

A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G
Reverse Opposite:
A G T C G T A C A G C T A G T C A C G T C G T A A C T G C A G T A C T G A C T G G A T C G A T C C G T A
p-value:1e-16
log p-value:-3.896e+01
Information Content per bp:1.786
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.99%
Number of Background Sequences with motif38.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets50.7 +/- 26.5bp
Average Position of motif in Background44.9 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TGGCCACTAGAGG------
TGGCCACCAGGGGGCGCTA
 A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TGGCCACTAGAGG-------
TGGCCACCAGGTGGCACTNT
 A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGGCCACTAGAGG---------
--GCCASCAGGGGGCGCYVNNG
 A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGGCCACTAGAGG
NNNNTTGACCCCTNNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGGCCACTAGAGG---
ATAACCACTTGAAAATT
 A C G T A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGCCACTAGAGG
TGACCYCT-----
 A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGCCACTAGAGG
ATGCCCACC-----
 A C G T A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TGGCCACTAGAGG
TGTCGTGACCCCTTAAT-
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TGGCCACTAGAGG---
-GGTCANYTGAGGWCA
 A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G A C G T A C G T A C G T
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGGCCACTAGAGG
TGACCTYA-----
 A C G T C A T G C A T G A G T C A G T C G C T A T A G C G C A T C G T A C T A G C T G A A C T G A C T G
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T