Information for 5-AATGGCCTAC (Motif 17)

C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C
Reverse Opposite:
C A T G A C G T C G T A C T A G A C T G A G T C A G T C C G T A G C A T A C G T
p-value:1e-9
log p-value:-2.079e+01
Information Content per bp:1.851
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif62.4
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets42.6 +/- 27.3bp
Average Position of motif in Background55.3 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AATGGCCTAC
--AGGCCTAG
 C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C
A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

PB0094.1_Zfp128_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AATGGCCTAC-----
TCTTTGGCGTACCCTAA
 A C G T A C G T C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCCTAC
GTTAATGGCC---
 A C G T A C G T A C G T C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AATGGCCTAC
TAATGGCGGNC
 A C G T C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AATGGCCTAC
--AGGCCTNG
 C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AATGGCCTAC
CCGATTGGCT---
 A C G T A C G T A C G T C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AATGGCCTAC--
--TGACCTARTT
 C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATGGCCTAC
TGATTGGCTANN
 A C G T A C G T C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AATGGCCTAC--
AGAAATGACTTCCCT
 A C G T A C G T A C G T C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C A C G T A C G T
C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AATGGCCTAC-----
-TTGACCTANTTATN
 C G T A C G T A C G A T A C T G A C T G A G T C G A T C G C A T C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A