Information for 14-GATTTAGCDCTDCTAH (Motif 20)

A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
Reverse Opposite:
C A T G C G A T C T G A A T C G G C A T C T G A C T A G G A C T A T C G G T A C A C G T C G T A C G T A C G T A G C A T A G T C
p-value:1e-9
log p-value:-2.083e+01
Information Content per bp:1.735
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif20.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets44.8 +/- 21.6bp
Average Position of motif in Background41.9 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GATTTAGCDCTDCTAH
NTGATTTATGGCC-----
 A C G T A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GATTTAGCDCTDCTAH
TGATTTATGGCC-----
 A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GATTTAGCDCTDCTAH
TGATTTATGGCC-----
 A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GATTTAGCDCTDCTAH
DGWTTTATGRCN-----
 A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GATTTAGCDCTDCTAH
TGATTTATGGC------
 A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GATTTAGCDCTDCTAH
NTTTTATGAC------
 A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GATTTAGCDCTDCTAH
-TTTTATGGCTN----
 A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GATTTAGCDCTDCTAH
NAATTTTATTACCNNN--
 A C G T A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GATTTAGCDCTDCTAH
NTTTTATTACN-----
 A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GATTTAGCDCTDCTAH
-TTTTATTGC------
 A C T G C G T A A C G T A C G T A C G T C G T A A C T G A T G C C G T A G A T C A G C T C G T A A T G C A G C T G C T A G A T C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T