Information for 1-GCCATAAARC (Motif 1)

T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C
Reverse Opposite:
A T C G A G C T A C G T A G C T C G A T C G T A G A C T C T A G C T A G A T G C
p-value:1e-36
log p-value:-8.291e+01
Information Content per bp:1.683
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif8.04%
Number of Background Sequences with motif477.3
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets51.4 +/- 22.8bp
Average Position of motif in Background51.0 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--GCCATAAARC
AAGCCATAAAA-
 A C G T A C G T T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAARC-
NGYCATAAAWCH
 A C G T T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GCCATAAARC
GTCATAAAAN
 T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GCCATAAARC
GCAATAAAA-
 T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAARC
GGTAATAAAAA
 A C G T T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---GCCATAAARC---
AGAGCCATAAAATTCG
 A C G T A C G T A C G T T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAARC
NGCAATTAAA-
 A C G T T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----GCCATAAARC--
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---GCCATAAARC----
ACGGCCATAAAATTAAT
 A C G T A C G T A C G T T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GCCATAAARC-
GGCCATAAATCA
 A C G T T A C G G A T C G A T C C T G A G C A T G C T A C T G A C G T A T C G A T A G C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A