Information for 16-CAGACAAGTTCACCCT (Motif 28)

A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
Reverse Opposite:
C G T A C T A G A C T G A C T G A C G T A C T G C G T A C G T A A T G C A C G T A C G T A C T G C G A T A G T C A C G T A C T G
p-value:1e-8
log p-value:-1.984e+01
Information Content per bp:1.914
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.5 +/- 23.8bp
Average Position of motif in Background10.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAAGTTCACCCT
BCAGACWA---------
 A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGACAAGTTCACCCT
AAGGCAAGTGT-----
 A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAAGTTCACCCT
CCAGACRSVB-------
 A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGACAAGTTCACCCT
CCAGACAG---------
 A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGACAAGTTCACCCT
AAGATAAGATAACA--
 A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGACAAGTTCACCCT-
TATTCAAGGTCATGCGA
 A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CAGACAAGTTCACCCT
CAAATCCAGACATCACA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CAGACAAGTTCACCCT
---TCAAGGTCAN---
 A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CAGACAAGTTCACCCT
-----AAGGTCAC---
 A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CAGACAAGTTCACCCT
----CAAGGHCANV--
 A G T C C G T A A C T G C G T A A G T C C G T A G T C A A T C G A C G T A C G T G T A C C G T A A G T C G T A C A G T C C G A T
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T