Information for 20-RGGYCAYAWGGCY (Motif 27)

C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C
Reverse Opposite:
C T A G A C T G G T A C A G T C C G T A A C G T C T G A A C G T A C T G C T G A A G T C A G T C A G T C
p-value:1e-8
log p-value:-1.984e+01
Information Content per bp:1.832
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.8 +/- 20.8bp
Average Position of motif in Background65.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF2/MA0526.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:RGGYCAYAWGGCY
-GGTCACATGAC-
 C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C
A C G T C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C A C G T

USF1/MA0093.2/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:RGGYCAYAWGGCY
-GGTCACGTGGC-
 C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C
A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:RGGYCAYAWGGCY
--GTCACATGAY-
 C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C
A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T

NEUROD2/MA0668.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:RGGYCAYAWGGCY
--ACCATATGGC-
 C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C
A C G T A C G T C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-RGGYCAYAWGGCY---
AAGGCCAGATGGTCCGG
 A C G T C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---RGGYCAYAWGGCY
CAAAGGTCAAGGG---
 A C G T A C G T A C G T C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:RGGYCAYAWGGCY
AGGTCA-------
 C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RGGYCAYAWGGCY----
GAGGTCAAAAGGTCAATG
 A C G T C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C A C G T A C G T A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

Rarg/MA0859.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-RGGYCAYAWGGCY--
AAGGTCAAAAGGTCAA
 A C G T C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C A C G T A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

Rarb/MA0857.1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--RGGYCAYAWGGCY-
AAAGGTCAAAAGGTCA
 A C G T A C G T C T A G C T A G A C T G A G C T A G T C G T C A A G C T C G T A C G A T C T A G A C T G A G T C A G T C A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A