Information for 11-AGGGCAATCTBAGCCT (Motif 17)

C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
Reverse Opposite:
T C G A A T C G A T C G G T A C A C G T T A G C C G T A A C T G T C G A A G C T A G C T A C T G A G T C A G T C A G T C A C G T
p-value:1e-11
log p-value:-2.562e+01
Information Content per bp:1.808
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 28.2bp
Average Position of motif in Background10.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAATCTBAGCCT
TNNGGGCAG---------
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAATCTBAGCCT
NAGGTCACNNTGACC--
 A C G T C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGGGCAATCTBAGCCT
AGGNCANNGTGACCT-
 C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAATCTBAGCCT
TRAGGTCA----------
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGGGCAATCTBAGCCT
CAGGTCACCGTGACCTT
 A C G T C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AGGGCAATCTBAGCCT
---GWAAYHTGABMC-
 C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AGGGCAATCTBAGCCT
---GWAAYHTGAKMC-
 C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---AGGGCAATCTBAGCCT
CAAAGGTCAG---------
 A C G T A C G T A C G T C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AGGGCAATCTBAGCCT
----AAATCACTGC--
 C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
A C G T A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAATCTBAGCCT
TAATGGCGGNC-------
 A C G T A C G T C G T A A C T G A C T G A C T G A G T C C T G A C T G A A G C T A G T C C G A T A C T G C G T A A C T G A T G C A T G C A G C T
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T