Information for 21-TCTCCTTGTCCTCTTA (Motif 39)

A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A
Reverse Opposite:
A C G T G T C A C G T A A T C G G T C A A C T G A T C G C T G A G T A C C G T A C T G A A C T G A T C G C G T A A T C G T G C A
p-value:1e-8
log p-value:-1.979e+01
Information Content per bp:1.756
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.5 +/- 23.2bp
Average Position of motif in Background47.0 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TCTCCTTGTCCTCTTA
TGACCTTGACCT----
 A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TCTCCTTGTCCTCTTA-----
----CATAACCACTTAACAAC
 A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.50
Offset:4
Orientation:forward strand
Alignment:TCTCCTTGTCCTCTTA-----
----CTTAACCACTTAAGGAT
 A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TCTCCTTGTCCTCTTA
-CTCATTGTC------
 A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:5
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:TCTCCTTGTCCTCTTA
--TNCCTTTGATGT--
 A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A
A C G T A C G T C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TCTCCTTGTCCTCTTA
TGACCTTGACCT----
 A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--TCTCCTTGTCCTCTTA
BNTGDCCTTG--------
 A C G T A C G T A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.49
Offset:6
Orientation:forward strand
Alignment:TCTCCTTGTCCTCTTA
------TGTCANYT--
 A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:TCTCCTTGTCCTCTTA
-AACCCTTTGATCTTT
 A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A
A C G T C G T A G C T A A G T C A G T C A G T C G A C T A G C T C G A T A T C G C G T A G C A T A T G C G A C T G A C T A G C T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:TCTCCTTGTCCTCTTA----
------TGACCTTTGACCTC
 A C G T A T G C A C G T A T G C G T A C A G C T A C G T A C T G A G C T A T G C G T A C A C G T A T G C A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C