Information for 7-KTCARAACTCTTGSMA (Motif 8)

A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A
Reverse Opposite:
A C G T A C G T A T C G G T A C G T C A C G T A A C T G C G T A A C T G A G C T C G A T A G C T C G A T A C T G C G T A G T A C
p-value:1e-14
log p-value:-3.335e+01
Information Content per bp:1.736
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.8 +/- 24.8bp
Average Position of motif in Background51.1 +/- 45.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:KTCARAACTCTTGSMA---
--ATAACCACTTGAAAATT
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:KTCARAACTCTTGSMA-
---------CTTGGCAA
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:3
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:KTCARAACTCTTGSMA--
-------TTCTTGGAAAN
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:KTCARAACTCTTGSMA--
--------NNTTGGCANN
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.54
Offset:5
Orientation:forward strand
Alignment:KTCARAACTCTTGSMA
-----ACCACTTGAA-
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:KTCARAACTCTTGSMA--
--TAAGCCACTTGAAATT
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A A C G T A C G T
A C G T A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:KTCARAACTCTTGSMA
----AASCACTCAA--
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.51
Offset:6
Orientation:forward strand
Alignment:KTCARAACTCTTGSMA
------CCACTTGAA-
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:KTCARAACTCTTGSMA
------WDNCTGGGCA
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

Myc/MA0147.2/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:KTCARAACTCTTGSMA
----AAGCACATGG--
 A C T G A C G T T G A C G C T A C T G A C G T A T C G A A G T C C G A T A G T C A C G T A C G T A C T G A T G C G T C A C G T A
A C G T A C G T A C G T A C G T T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T