Information for 19-WCAAARGTTAMTSCAG (Motif 23)

G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
Reverse Opposite:
A G T C C G A T A C T G A T G C G C T A C A G T C A G T C G T A G C T A G T A C A G T C C G A T A G C T A C G T A C T G C G A T
p-value:1e-10
log p-value:-2.400e+01
Information Content per bp:1.668
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.0 +/- 15.8bp
Average Position of motif in Background45.7 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---WCAAARGTTAMTSCAG
AAAACAAAGG---------
 A C G T A C G T A C G T G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--WCAAARGTTAMTSCAG
ANGNAAAGGTCA------
 A C G T A C G T G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-WCAAARGTTAMTSCAG
RACAAWGG---------
 A C G T G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-WCAAARGTTAMTSCAG
AACAAAGG---------
 A C G T G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:WCAAARGTTAMTSCAG
--AAAAGTCAA-----
 G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--WCAAARGTTAMTSCAG
TCTCAAAGGTCACGAG--
 A C G T A C G T G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:WCAAARGTTAMTSCAG
ACAAAGGNBCCT----
 G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----WCAAARGTTAMTSCAG
GTAGGGCAAAGGTCA------
 A C G T A C G T A C G T A C G T A C G T G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:WCAAARGTTAMTSCAG
-CAAAGGTCAG-----
 G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----WCAAARGTTAMTSCAG
GAGGTCAAAGGTCA------
 A C G T A C G T A C G T A C G T G C T A G T A C C G T A C T G A C G T A C T A G A C T G C G A T G C A T G T C A G T C A C G A T T A C G G T A C C G T A C T A G
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T