Information for 2-AARTTTCAAATAMAAW (Motif 2)

C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A
Reverse Opposite:
C G A T A C G T A C G T A C G T A G C T C G T A A C G T A C G T A C G T C T A G C G T A G T C A G T C A A G C T A C G T A C G T
p-value:1e-16
log p-value:-3.690e+01
Information Content per bp:1.876
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.3 +/- 31.2bp
Average Position of motif in Background59.2 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AARTTTCAAATAMAAW
CGGTTTCAAA------
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AARTTTCAAATAMAAW----
---GTTCAAAAAAAAAATTC
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AARTTTCAAATAMAAW---
---CTACCAATAAAATTCT
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AARTTTCAAATAMAAW
--NATTCAAAT-----
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:AARTTTCAAATAMAAW
------CCAATAAAAA
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.60
Offset:6
Orientation:forward strand
Alignment:AARTTTCAAATAMAAW
------CCAATAAAAC
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.60
Offset:6
Orientation:forward strand
Alignment:AARTTTCAAATAMAAW
------CCAATAAAAA
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PB0187.1_Tcf7_2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AARTTTCAAATAMAAW
NNNTTTNTAATACNG-
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AARTTTCAAATAMAAW
AAATAAGAAAAAAC--
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AARTTTCAAATAMAAW
-----NCYAATAAAA-
 C G T A C G T A T C G A A C G T C A G T A C G T A G T C C G T A C G T A G T C A C G A T C T G A T G C A C G T A G T C A C G T A
A C G T A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T