Information for 3-RACCAGTKAG (Motif 6)

C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G
Reverse Opposite:
A G T C A G C T T G C A G T C A A T G C A C G T A T C G A C T G G C A T A G C T
p-value:1e-8
log p-value:-1.989e+01
Information Content per bp:1.798
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif9.78%
Number of Background Sequences with motif258.6
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets60.4 +/- 29.7bp
Average Position of motif in Background52.8 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----RACCAGTKAG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---RACCAGTKAG
ACTAGCCAATCA-
 A C G T A C G T A C G T C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:RACCAGTKAG
AGCCAATCGG
 C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--RACCAGTKAG------
TGGACCAATCAGCACTCT
 A C G T A C G T C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:RACCAGTKAG
-ACCACTTAA
 C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

PH0107.1_Msx2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---RACCAGTKAG----
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---RACCAGTKAG----
CATAACCACTTAACAAC
 A C G T A C G T A C G T C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---RACCAGTKAG---
AACAACCAATTAATTC
 A C G T A C G T A C G T C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---RACCAGTKAG----
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RACCAGTKAG
-ACCACTTAA
 C T G A C G T A A G T C A T G C C G T A T A C G A C G T A C G T C T G A A C T G
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A