Information for 2-ATGAATTTTAAWTCTG (Motif 3)

C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G
Reverse Opposite:
G T A C C G T A T A C G C G T A C G T A G C A T A C G T C T G A C T G A C T G A C G T A C G A T A G C T T A G C G T C A C G A T
p-value:1e-12
log p-value:-2.907e+01
Information Content per bp:1.668
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif49.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets44.2 +/- 22.8bp
Average Position of motif in Background48.8 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ATGAATTTTAAWTCTG
CTCATGAATATTCAT----
 A C G T A C G T A C G T C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T A C G T A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATGAATTTTAAWTCTG
TTGAATGAAATTCGA-----
 A C G T A C G T A C G T A C G T C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------ATGAATTTTAAWTCTG
NNTNTCATGAATGT--------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:ATGAATTTTAAWTCTG
------TTTGAAACCG
 C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ATGAATTTTAAWTCTG
ATGAATATTC------
 C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ATGAATTTTAAWTCTG-
-TNAATTTTATTACCTN
 C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G A C G T
A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

ONECUT1/MA0679.1/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---ATGAATTTTAAWTCTG
ANTATCGATTTTTN-----
 A C G T A C G T A C G T C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G
C T G A C G A T G C A T C T G A C G A T G A T C C T A G T G C A A G C T G A C T C G A T G C A T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:ATGAATTTTAAWTCTG-----
---NAGTTTCABTHTGACTNW
 C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C T G A A T C G A G C T A G C T G A C T A G T C G C T A A C G T C G A T G C A T C G A T A T C G C G T A T A G C G C A T A T G C C G T A

PB0136.1_IRC900814_2/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----ATGAATTTTAAWTCTG
TTTTACGACTTTCCAT----
 A C G T A C G T A C G T A C G T C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T A C G T A C G T A C G T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---ATGAATTTTAAWTCTG
ATTATCGATTTTTT-----
 A C G T A C G T A C G T C G T A C A G T A T C G C T G A C G T A G C A T A G C T A G C T A G C T G T C A C G T A G C A T C G A T A T G C C G A T A C T G
C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T A C G T A C G T A C G T A C G T A C G T