Information for 5-GTCCTGCACCCCAAWG (Motif 5)

A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G
Reverse Opposite:
G T A C C G T A A C G T A G C T A C T G A C T G A T C G A C T G A C G T A C T G G A T C G C T A A C T G A T C G C G T A G T A C
p-value:1e-12
log p-value:-2.983e+01
Information Content per bp:1.777
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 21.3bp
Average Position of motif in Background51.5 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTGCACCCCAAWG
TGTCTGDCACCT-----
 A C G T A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTCCTGCACCCCAAWG
CTGTCTGTCACCT-----
 A C G T A C G T A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:3
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GTCCTGCACCCCAAWG
----ATCACCCCAT--
 A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G
A C G T A C G T A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GTCCTGCACCCCAAWG
----ATCACCCCAT--
 A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G
A C G T A C G T A C G T A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:5
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GTCCTGCACCCCAAWG
----ATCACCCCAC--
 A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G
A C G T A C G T A C G T A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GTCCTGCACCCCAAWG
--CNGTCACGCCAC--
 A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G
A C G T A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:7
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GTCCTGCACCCCAAWG
-----AAACCGCAAA-
 A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.48
Offset:9
Orientation:reverse strand
Alignment:GTCCTGCACCCCAAWG--
---------GACAATGNN
 A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:GTCCTGCACCCCAAWG-
-------VRRACAAWGG
 A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.48
Offset:9
Orientation:reverse strand
Alignment:GTCCTGCACCCCAAWG-
---------RACAAWGG
 A C T G A C G T T A G C A G T C C G A T C T A G A G T C G T C A T A G C A T G C T G A C A G T C C T G A C G T A C G A T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G