Information for 3-CTTTAAGGGA (Motif 7)

A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A
Reverse Opposite:
G A C T G A T C G A T C G A T C G C A T G C A T C G T A T G C A G C T A T A C G
p-value:1e-12
log p-value:-2.972e+01
Information Content per bp:1.686
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif9.31%
Number of Background Sequences with motif1727.8
Percentage of Background Sequences with motif3.75%
Average Position of motif in Targets49.0 +/- 25.7bp
Average Position of motif in Background49.5 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTTTAAGGGA
--CTAATKGV
 A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A
A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTTTAAGGGA-
CCTTTTATAGNC
 A C G T A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTTTAAGGGA-
-TTTAATTGCN
 A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A A C G T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTTTAAGGGA
TTTTTATTGG-
 A C G T A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTTTAAGGGA
TTTTATKRGG
 A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTTTAAGGGA
NTTTTATTGG-
 A C G T A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTTAAGGGA
TTTTATTRGN
 A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTTAAGGGA
NTTTTATTGG-
 A C G T A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTTTAAGGGA
DGWTTTATGRCN
 A C G T A C G T A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTTTAAGGGA-
--TTAAGTGGN
 A T G C C G A T A C G T C G A T C G T A C G T A C A T G C T A G C T A G C T G A A C G T
A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T