Information for 6-CCMTTSAMAAAGG (Motif 13)

A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G
Reverse Opposite:
A T G C A G T C A C G T A G C T A C G T A C T G A C G T T A G C G T C A C T G A A C G T A C T G T A C G
p-value:1e-9
log p-value:-2.088e+01
Information Content per bp:1.769
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif33.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets59.3 +/- 22.7bp
Average Position of motif in Background48.1 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CCMTTSAMAAAGG
-----AACAAAGG
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CCMTTSAMAAAGG
-----RACAAWGG
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCMTTSAMAAAGG---
AAACAGACAAAGGAAT
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

SOX10/MA0442.1/Jaspar

Match Rank:4
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:CCMTTSAMAAAGG
------ACAAAG-
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CCMTTSAMAAAGG-----
------ACAAAGGNBCCT
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CCMTTSAMAAAGG-----
----GGAGAAAGGTGCGA
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CCMTTSAMAAAGG
---VRRACAAWGG
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCMTTSAMAAAGG
---AAAACAAAGG
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCMTTSAMAAAGG-----
-NNTNNACAATGGGANNN
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCMTTSAMAAAGG
---GGAACAAAGR
 A T G C G T A C T G C A A G C T A C G T A T C G G T C A T G A C C G T A C T G A C G T A A C T G T A C G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G