Information for 6-SCACAGMGGGGCGGCA (Motif 13)

A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A
Reverse Opposite:
A C G T A T C G T G A C A G T C A C T G A G T C A G T C A G T C A G T C A C G T A G T C C G A T A C T G A C G T A C T G A T C G
p-value:1e-10
log p-value:-2.319e+01
Information Content per bp:1.801
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.0 +/- 18.3bp
Average Position of motif in Background32.7 +/- 4.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC1/MA0696.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:SCACAGMGGGGCGGCA
-CACAGCGGGGGGTC-
 A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:SCACAGMGGGGCGGCA
NCGCAGCGGGGGGTC-
 A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:SCACAGMGGGGCGGCA
NCNCAGCGGGGGGTC-
 A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:SCACAGMGGGGCGGCA
DCHCAGCAGGRGGCC-
 A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:SCACAGMGGGGCGGCA
-CACAGCAGGGGG---
 A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:SCACAGMGGGGCGGCA--
-NNNAAGGGGGCGGGNNN
 A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--SCACAGMGGGGCGGCA
GAGCACAGCAGGACA---
 A C G T A C G T A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:SCACAGMGGGGCGGCA
DCTCAGCAGG------
 A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0202.1_Zfp410_2/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:SCACAGMGGGGCGGCA---
--NNTNNGGGGCGGNGNGN
 A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C A G T C G A T G C A T T A C G A C T G T A C G A C T G T G A C T C A G C T A G C T A G C T A G C A G T C T A G T C G A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:SCACAGMGGGGCGGCA
-CACAGN---------
 A T C G G T A C C G T A A G T C C G T A A C T G G T A C A C T G C T A G A C T G C T A G G T A C A C T G A C T G A T G C C G T A
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T