Information for 2-TWTGTGAGRWRRA (Motif 3)

A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
Reverse Opposite:
A C G T A G C T A G T C C G T A A G T C G T A C A C G T A G T C C G T A A G T C C G T A G C A T C G T A
p-value:1e-6
log p-value:-1.483e+01
Information Content per bp:1.845
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif68.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets89.5 +/- 3.5bp
Average Position of motif in Background62.3 +/- 67.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TWTGTGAGRWRRA
NAATTTTACGAGNTNN-
 A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TWTGTGAGRWRRA
ANATTTTACGAGNNNN-
 A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TWTGTGAGRWRRA
-AGGTGTGAAM--
 A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T

NFIL3/MA0025.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TWTGTGAGRWRRA
TTATGTAACAT---
 A C G T A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TWTGTGAGRWRRA
TTTTATKRGG----
 A C G T A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TWTGTGAGRWRRA
CTTTGT--------
 A C G T A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TWTGTGAGRWRRA
NTTTTACGAGN----
 A C G T A C G T A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T A C G T

MGA/MA0801.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TWTGTGAGRWRRA
AGGTGTGA------
 A C G T A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TWTGTGAGRWRRA
AGGTGTGA------
 A C G T A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:TWTGTGAGRWRRA
TAGGTGTGAAG--
 A C G T C G A T A C G T A C T G A C G T A C T G C G T A A C T G C T A G C G A T C T A G C T G A C G T A
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T