Information for 11-CCAGGAATTAAATCAA (Motif 16)

A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A
Reverse Opposite:
A C G T A G C T C T A G C G T A C A G T C G A T C G A T C T G A G T C A A C G T A C G T A G T C A G T C C G A T A C T G T A C G
p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.791
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 22.1bp
Average Position of motif in Background47.2 +/- 40.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCAGGAATTAAATCAA
---GGCCATAAATCAC
 A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A
A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCAGGAATTAAATCAA
---GGCCATAAATCA-
 A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A
A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCAGGAATTAAATCAA
ACAAGCAATTAAAGAAT
 A C G T A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCAGGAATTAAATCAA
ACAAGCAATTAAAGAAT
 A C G T A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PB0012.1_Elf3_1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCAGGAATTAAATCAA
AACAAGGAAGTAA-----
 A C G T A C G T A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A
C G A T C G T A G T A C T G C A T G C A C T A G C A T G C G T A G C T A T C A G G A C T C G T A T C G A A C G T A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCAGGAATTAAATCAA
---GGCCATAAATCA-
 A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A
A C G T A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCAGGAATTAAATCAA
ACAAGCAATTAATGAAT
 A C G T A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCAGGAATTAAATCAA
ACAAGCAATTAATGAAT
 A C G T A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:9
Score:0.56
Offset:8
Orientation:forward strand
Alignment:CCAGGAATTAAATCAA--
--------CAAATCACTG
 A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PB0123.1_Foxl1_2/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCAGGAATTAAATCAA----
----ATATCAAAACAAAACA
 A T G C G T A C C G T A A C T G C T A G G T C A G T C A A C G T A G C T C G T A C G T A G T C A G C A T A G T C C T G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A