Information for 2-AGGSACYWGAGWS (Motif 2)

C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G
Reverse Opposite:
A T G C G C A T A G T C A C G T A G T C G C T A C T G A A C T G A C G T A T G C A G T C A G T C A C G T
p-value:1e-15
log p-value:-3.547e+01
Information Content per bp:1.837
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.4 +/- 28.7bp
Average Position of motif in Background48.2 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGSACYWGAGWS--
ATAACCACTTGAAAATT
 A C G T A C G T C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AGGSACYWGAGWS---
-----CTTGAGTGGCT
 C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGGSACYWGAGWS
-GWAAYHTGAKMC
 C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGGSACYWGAGWS
--CCACTTGAA--
 C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGGSACYWGAGWS-
TAAGCCACTTGAAATT
 A C G T A C G T C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGGSACYWGAGWS
-RSCACTYRAG--
 C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGSACYWGAGWS-
TAAGCCACTTGAAATT
 A C G T A C G T C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGGSACYWGAGWS
-GWAAYHTGABMC
 C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0200.1_Zfp187_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGGSACYWGAGWS-
NNAGGGACAAGGGCNC
 A C G T A C G T C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGGSACYWGAGWS-
TAAGCCACTTGAATTT
 A C G T A C G T C G T A A C T G C T A G A T C G C G T A G T A C A G C T C G A T C T A G C G T A A C T G C G T A T A C G A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T