Information for 4-CAACACTCAAAAT (Motif 14)

G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T
Reverse Opposite:
C T G A A C G T A C G T C G A T A C G T A C T G C G T A A C T G C G A T C T A G A C G T A G C T A C T G
p-value:1e-9
log p-value:-2.292e+01
Information Content per bp:1.839
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.4 +/- 27.8bp
Average Position of motif in Background50.5 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAACACTCAAAAT
AGCCACTCAAG--
 G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAACACTCAAAAT
-RSCACTYRAG--
 G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAACACTCAAAAT
AASCACTCAA---
 G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAACACTCAAAAT
MRSCACTYAA---
 G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAACACTCAAAAT
-NSCACTYVAV--
 G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAACACTCAAAAT
AAGCACTTAA---
 G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAACACTCAAAAT
CCATCAATCAAA--
 A C G T G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAACACTCAAAAT--
-----CCAAAAATAG
 G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAACACTCAAAAT--
ATAACCACTTGAAAATT
 A C G T A C G T G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

MEF2D/MA0773.1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CAACACTCAAAAT---
----ACTATAAATAGA
 G T A C C T G A G T C A A G T C C G T A A G T C A C G T A G T C C G T A C G T A C G T A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A