Information for 5-CAAGCAAGCACGCACG (Motif 27)

G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
Reverse Opposite:
A G T C C A T G A C G T T A C G A T G C A T C G A G C T A T C G A G T C A C G T A G C T A T C G A T G C A G C T A C G T A C T G
p-value:1e-7
log p-value:-1.672e+01
Information Content per bp:1.701
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif26.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets74.3 +/- 12.7bp
Average Position of motif in Background40.1 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAAGCAAGCACGCACG
AGCGGCACACACGCAA-
 A C G T G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CAAGCAAGCACGCACG
-----TBGCACGCAA-
 G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAAGCAAGCACGCACG
SCAGYCADGCATGAC--
 A C G T G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CAAGCAAGCACGCACG
--------CACGCA--
 G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAAGCAAGCACGCACG
AAGGCAAGTGT-----
 G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CAAGCAAGCACGCACG
GCAGCCAAGCGTGACN-
 A C G T G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CAAGCAAGCACGCACG
------AGCGCGCC--
 G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CAAGCAAGCACGCACG
-------GCACGTNC-
 G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:9
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CAAGCAAGCACGCACG
-------GCACGTAY-
 G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T

PB0095.1_Zfp161_1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAAGCAAGCACGCACG
NCANGCGCGCGCGCCA-
 A C G T G T A C G T C A T C G A A T C G A T G C C T G A G T C A C T A G A T G C C T G A T A G C A T C G A G T C G T C A G T A C T A C G
G C A T G A T C C T G A C T A G C T A G G A T C T C A G G A T C C T A G A G T C C T A G A G T C T A C G G A T C G A T C G T C A A C G T