Information for 1-CGGGCWMACAAAG (Motif 2)

A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G A T A C T G C G A T A C G T C G A T A C T G A G T C G T A C A G T C A C T G
p-value:1e-16
log p-value:-3.684e+01
Information Content per bp:1.847
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.2 +/- 21.5bp
Average Position of motif in Background77.3 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CGGGCWMACAAAG-
----VRRACAAWGG
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CGGGCWMACAAAG-
----AAAACAAAGG
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:CGGGCWMACAAAG
-------ACAAAG
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGGGCWMACAAAG-----
-AGAAGAACAAAGGACTA
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CGGGCWMACAAAG-
------AACAAAGG
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CGGGCWMACAAAG-
----GGAACAAAGR
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CGGGCWMACAAAG-
------RACAAWGG
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGGGCWMACAAAG-----
-ATAAGAACAAAGGACTA
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:CGGGCWMACAAAG------
-------ACAAAGGNBCCT
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CGGGCWMACAAAG----
-AAACAGACAAAGGAAT
 A G T C C T A G C A T G A C T G G T A C C G T A G T C A C G T A A G T C C G T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T