Information for 2-GADASAGAAVAAKGRA (Motif 5)

T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A
Reverse Opposite:
A C G T A G C T G T A C G T C A G C A T A C G T A G C T C A G T A G C T G T A C A G C T T A G C A G C T G C T A C G A T A G T C
p-value:1e-7
log p-value:-1.761e+01
Information Content per bp:1.585
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif10.34%
Number of Background Sequences with motif365.0
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets47.0 +/- 30.6bp
Average Position of motif in Background51.0 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GADASAGAAVAAKGRA
-----AAAACAATGG-
 T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A
A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GADASAGAAVAAKGRA---
--ATAAGAACAAAGGACTA
 T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GADASAGAAVAAKGRA
-----GGAACAAAGR-
 T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A
A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GADASAGAAVAAKGRA
------GAACAATGGN
 T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GADASAGAAVAAKGRA-
-AAACAGACAAAGGAAT
 T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GADASAGAAVAAKGRA---
---AATGAACAATGGAATT
 T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GADASAGAAVAAKGRA---
--AGAAGAACAAAGGACTA
 T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A A C G T A C G T A C G T
A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

LEF1/MA0768.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GADASAGAAVAAKGRA--
---AAAGATCAAAGGGTT
 T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A A C G T A C G T
A C G T A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

Tcf7/MA0769.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GADASAGAAVAAKGRA
---AAAGATCAAAGG-
 T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A
A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GADASAGAAVAAKGRA--
TTTTTAGAGATAAGAAATAAAG
 A C G T A C G T A C G T A C G T T C A G G C T A C G A T T C G A A T C G C T G A A C T G T C G A G T C A T C G A T C G A C G T A C A G T A C T G C T A G T G C A A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G