Information for 1-AKWTCCWTTAATGANG (Motif 4)

C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G
Reverse Opposite:
A G T C A G T C C G A T A G T C G C T A A G C T A C G T G T C A G T C A C G A T A T C G A C T G G T C A C G A T G T A C C G A T
p-value:1e-8
log p-value:-1.897e+01
Information Content per bp:1.697
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.60%
Number of Background Sequences with motif11.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets67.5 +/- 26.3bp
Average Position of motif in Background45.9 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AKWTCCWTTAATGANG
AAAAACCATTAAGG---
 A C G T C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AKWTCCWTTAATGANG--
--AGTTATTAATGAGGTC
 C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G A C G T A C G T
A C G T A C G T G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

NKX6-1/MA0674.1/Jaspar

Match Rank:3
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:AKWTCCWTTAATGANG
-------TTAATTAN-
 C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AKWTCCWTTAATGANG
------GKTAATGR--
 C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AKWTCCWTTAATGANG-
-------NTAATGAGCT
 C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AKWTCCWTTAATGANG
---BCMATTAG-----
 C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AKWTCCWTTAATGANG
NNNATTCCTCGAAAGN--
 A C G T A C G T C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AKWTCCWTTAATGANG
--ACCGATTAG-----
 C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G
A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T

GSX1/MA0892.1/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:AKWTCCWTTAATGANG
------NNTAATTAGN
 C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T G C A T C G T A C G T A A G C T C A G T C T G A T A C G C A T G

Bcl6/MA0463.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AKWTCCWTTAATGANG
-TTTCCTAGAAAGCA-
 C G T A A C T G C G T A A C G T G T A C A T G C C G T A A C G T A C G T C G T A C T G A C A G T A C T G C G T A A C T G C T A G
A C G T C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A A C G T