Information for 25-TGGGAGACAGACA (Motif 54)

A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A G T C A C G T A C T G A C G T A G T C A C G T A G T C A G T C A G T C C G T A
p-value:1e-3
log p-value:-7.074e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets6.0 +/- 0.0bp
Average Position of motif in Background49.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TGGGAGACAGACA-
-AGGTGNCAGACAG
 A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TGGGAGACAGACA
-AGGTGHCAGACA
 A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGGGAGACAGACA
TGAGTGACAGSC-
 A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGGAGACAGACA-
TGGCAGNCTGCCAG
 A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:TGGGAGACAGACA---
------CCAGACRSVB
 A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:TGGGAGACAGACA-
------CCAGACAG
 A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:TGGGAGACAGACA-
------BCAGACWA
 A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TGGGAGACAGACA-----
-CAAATCCAGACATCACA
 A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGGGAGACAGACA
NTGATTGACAGN--
 A C G T A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGGGAGACAGACA--
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G A C T G C G T A A C T G C G T A A G T C C G T A A C T G C G T A A G T C C G T A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G