Information for 17-TTATGCCAAG (Motif 50)

A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G A C T G A G T C C G T A A C G T C G T A C G T A
p-value:1e-3
log p-value:-7.074e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets13.0 +/- 0.0bp
Average Position of motif in Background21.2 +/- 10.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TTATGCCAAG-
-GGTGCCAAGT
 A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTATGCCAAG
-CGTGCCAAG
 A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:TTATGCCAAG
---TGCCAA-
 A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TTATGCCAAG-
--ATGCCAACC
 A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TTATGCCAAG
--TTGCCAAG
 A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTATGCCAAG
TTATGCAAAT
 A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTATGCCAAG-----
ACTATGCCAACCTACC
 A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTATGCCAAG-
AATATGCAAATT
 A C G T A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTATGCCAAG
-TATGCAAAT
 A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

POU3F1/MA0786.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTATGCCAAG--
TTATGCAAATTA
 A C G T A C G T C G T A A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A