Information for 3-TGGKWAATGAGCTCTT (Motif 4)

A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T
Reverse Opposite:
T C G A C G T A C T A G C G T A C T A G T G A C G A C T A G T C C G T A A C G T G C A T G C A T G T C A A G T C A G T C G T C A
p-value:1e-9
log p-value:-2.290e+01
Information Content per bp:1.711
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif26.32%
Number of Background Sequences with motif71.4
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets31.4 +/- 16.1bp
Average Position of motif in Background49.1 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGGKWAATGAGCTCTT
-GGGCGATGACCAYTC
 A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T
A C G T C T A G T A C G T C A G A G T C A C T G T G C A A G C T A C T G G T C A G T A C G A T C C T G A A G T C A C G T A T G C

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGGKWAATGAGCTCTT---
---NNNNTGACCTTTNNNN
 A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGGKWAATGAGCTCTT---
---NNNGTGACCTTTGNNN
 A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:TGGKWAATGAGCTCTT
-------TGACCYCT-
 A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.54
Offset:7
Orientation:forward strand
Alignment:TGGKWAATGAGCTCTT---
-------TGACCTTTNCNT
 A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:TGGKWAATGAGCTCTT
------CTGACCTTTG
 A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGGKWAATGAGCTCTT
AGGTCANTGACCTN--
 A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:TGGKWAATGAGCTCTT
-------TGACCTYA-
 A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGGKWAATGAGCTCTT
NNAATTAATGACCNNN-
 A C G T A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TGGKWAATGAGCTCTT
--GTTAATGGCC----
 A C G T C T A G A C T G A C G T C G A T C G T A G T C A C G A T A C T G C T G A A C T G A G T C A C G T A G T C A C G T A G C T
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T