Information for 14-TBGHGGCCAABGGCGA (Motif 25)

A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
Reverse Opposite:
G A C T T A G C C T A G G A T C G T A C T G A C C G A T A C G T A C T G A T C G A G T C A G T C C G T A A T G C T A C G G T C A
p-value:1e-5
log p-value:-1.336e+01
Information Content per bp:1.631
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif53.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets20.3 +/- 5.4bp
Average Position of motif in Background55.3 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PLAG1/MA0163.1/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TBGHGGCCAABGGCGA
--GGGGCCCAAGGGGG
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
A C G T A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TBGHGGCCAABGGCGA
--TAGGGCAAAGGTCA
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TBGHGGCCAABGGCGA-
-CTTGGCANNNTGCCAA
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TBGHGGCCAABGGCGA
-ACTAGCCAATCA---
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TBGHGGCCAABGGCGA
----AGCCAATCGG--
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TBGHGGCCAABGGCGA
-GTAGGGCAAAGGTCA
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TBGHGGCCAABGGCGA
--CGTGCCAAG-----
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TBGHGGCCAABGGCGA
--GAGGTCAAAGGTCA
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:TBGHGGCCAABGGCGA
----TGCCAA------
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:TBGHGGCCAABGGCGA
--GAGGTCAAAGGTCA
 A C G T A G T C A T C G G A C T C T A G A C T G T A G C T G A C T G C A C G T A A C T G A C T G C T A G A G T C A T C G C T G A
A C G T A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A