Information for 5-GAGAGTAAAACAG (Motif 13)

A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G A C G T A G C T A C G T A C G T C G T A G T A C C G A T A G T C A G C T G T A C
p-value:1e-7
log p-value:-1.757e+01
Information Content per bp:1.819
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif13.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets30.0 +/- 14.4bp
Average Position of motif in Background56.9 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGAGTAAAACAG
CGGTTTCAAA---
 A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAGAGTAAAACAG
AGGTGNCAGACAG
 A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGAGTAAAACAG
AGGTGHCAGACA-
 A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAGAGTAAAACAG----
-ATATCAAAACAAAACA
 A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGAGTAAAACAG----
--BAGTCATANTGAAAG
 A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G

PH0137.1_Pitx1/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GAGAGTAAAACAG
TTAGAGGGATTAACAAT-
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAGAGTAAAACAG-----
----GCAAAACATTACTA
 A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:GAGAGTAAAACAG-
--------CACAGN
 A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAGAGTAAAACAG------
-WNAGTCADAVTGAAACTN
 A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

Foxo1/MA0480.1/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GAGAGTAAAACAG--
----TGTAAACAGGA
 A C T G C T G A A C T G C G T A A C T G A C G T G T C A C G T A C T G A C G T A A T G C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G C G A T G T C A C G T A C G T A A G T C C G T A T C A G T A C G G T C A