Information for 4-KGCCSYAGSARAKYCC (Motif 6)

A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G C T A G T G A C A C G T A G T C A G C T A T G C A G T C C G A T C T A G A T G C A C T G A C T G A G T C G T A C
p-value:1e-11
log p-value:-2.647e+01
Information Content per bp:1.819
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.8 +/- 23.0bp
Average Position of motif in Background61.5 +/- 10.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:KGCCSYAGSARAKYCC-
-------GGAAATTCCC
 A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:KGCCSYAGSARAKYCC-
-------GGAAANCCCC
 A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:KGCCSYAGSARAKYCC-
-------GGAAATCCCC
 A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.60
Offset:7
Orientation:forward strand
Alignment:KGCCSYAGSARAKYCC-
-------GGAAATTCCC
 A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:KGCCSYAGSARAKYCC--
------GGGAAATCCCCN
 A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--KGCCSYAGSARAKYCC
ATTGCCTGAGGCAAT---
 A C G T A C G T A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:KGCCSYAGSARAKYCC
-GCCTCAGGGCAT---
 A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C
A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--KGCCSYAGSARAKYCC
ATTGCCTCAGGCAAT---
 A C G T A C G T A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:KGCCSYAGSARAKYCC
---NACAGGAAAT---
 A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:KGCCSYAGSARAKYCC
AGCCTCAGGCA-----
 A C T G A C T G A G T C A G T C A T C G A G T C C G T A A C T G A T C G C T G A C T A G G T C A A C T G A G T C A G T C A G T C
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T