Information for 7-CCAGVCTGRA (Motif 13)

G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A
Reverse Opposite:
G A C T A G T C A G T C C G T A T C A G A G T C A G T C A C G T C T A G C T A G
p-value:1e-10
log p-value:-2.310e+01
Information Content per bp:1.748
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif5.96%
Number of Background Sequences with motif1018.0
Percentage of Background Sequences with motif2.14%
Average Position of motif in Targets46.7 +/- 27.5bp
Average Position of motif in Background50.8 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCAGVCTGRA
BCAGACWA--
 G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAGVCTGRA
CCAGACAG--
 G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCAGVCTGRA
-NNNANTGA-
 G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A
A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCAGVCTGRA--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCAGVCTGRA
CCAGACRSVB
 G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCAGVCTGRA
ATGCCAGACN---
 A C G T A C G T A C G T G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCAGVCTGRA
DCTCAGCAGG--
 A C G T A C G T G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCAGVCTGRA-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCAGVCTGRA
TGCCCAGNHW---
 A C G T A C G T A C G T G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCAGVCTGRA
CACAGN-----
 A C G T G A T C A G T C C G T A A C T G T C A G A G T C A C G T A C T G C T A G C T G A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T