Information for 1-CTCAGAGGATTTC (Motif 2)

A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C
Reverse Opposite:
A T C G C G T A C G T A C G T A G A C T A G T C A G T C A C G T A G T C C G A T A T C G C G T A A C T G
p-value:1e-11
log p-value:-2.705e+01
Information Content per bp:1.929
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.7 +/- 26.0bp
Average Position of motif in Background55.8 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTCAGAGGATTTC-----
-TNNNATGATTTCNNCNN
 A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTCAGAGGATTTC-
----GGGGATTTCC
 A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C A C G T
A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

Crx/MA0467.1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTCAGAGGATTTC
--AAGAGGATTAG
 A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C
A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTCAGAGGATTTC--
---NGGGGATTTCCC
 A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C A C G T A C G T
A C G T A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTCAGAGGATTTC-
----GGGAATTTCC
 A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C A C G T
A C G T A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CTCAGAGGATTTC-
----GGGAATTTCC
 A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C A C G T
A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CTCAGAGGATTTC-
----GGGGATTTCC
 A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C A C G T
A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CTCAGAGGATTTC---
------TGGTTTCAGT
 A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CTCAGAGGATTTC
-NNTGTGGATTSS
 A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C
A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CTCAGAGGATTTC
GTCCCCAGGGGA----
 A C G T A C G T A C G T A G T C A C G T A T G C C G T A A C T G C G T A C T A G A C T G C T G A A C G T A C G T A C G T A T G C
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T A C G T A C G T