Information for 20-CATCCAGGCTAGCGTG (Motif 39)

A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G
Reverse Opposite:
A T G C C G T A A G T C A T C G A G T C A G C T C T G A A C T G A G T C A G T C A C G T A C T G A C T G C T G A C G A T A T C G
p-value:1e-6
log p-value:-1.417e+01
Information Content per bp:1.914
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 25.8bp
Average Position of motif in Background43.6 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CATCCAGGCTAGCGTG---
---GCAGCCAAGCGTGACN
 A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CATCCAGGCTAGCGTG--
---SCAGYCADGCATGAC
 A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CATCCAGGCTAGCGTG
----AAGGCAAGTGT-
 A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.50
Offset:10
Orientation:forward strand
Alignment:CATCCAGGCTAGCGTG
----------TGCGTG
 A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

PB0051.1_Osr2_1/Jaspar

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CATCCAGGCTAGCGTG---
---CNNNGCTACTGTANNN
 A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

PAX9/MA0781.1/Jaspar

Match Rank:6
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CATCCAGGCTAGCGTG---
--TGCAGTCATGCGTGACG
 A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G A C G T A C G T A C G T
A C G T A C G T C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:CATCCAGGCTAGCGTG---
---------TTGCGTGCVA
 A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

PAX1/MA0779.1/Jaspar

Match Rank:8
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CATCCAGGCTAGCGTG---
--NGCANTCATGCGTGACG
 A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G A C G T A C G T A C G T
A C G T A C G T C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:CATCCAGGCTAGCGTG
---BCAGACWA-----
 A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CATCCAGGCTAGCGTG--
GAGGGCAGCCAAGCGTGAC
 A C G T A T G C C G T A A G C T A G T C A G T C C G T A A C T G A C T G A G T C A G C T C T G A A C T G A T G C A C T G A C G T A T C G A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C