Information for 5-WTRWSTKMTTTAT (Motif 15)

C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A C G T A A C T G G T A C C G T A A T C G C G T A A G C T C G T A C G T A
p-value:1e-10
log p-value:-2.305e+01
Information Content per bp:1.822
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.5 +/- 25.4bp
Average Position of motif in Background55.5 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:WTRWSTKMTTTAT----
----NTGATTTATGGCC
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:WTRWSTKMTTTAT---
-----TGATTTATGGC
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:3
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:WTRWSTKMTTTAT----
-----DGWTTTATGRCN
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:WTRWSTKMTTTAT----
-----TGATTTATGGCC
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:WTRWSTKMTTTAT----
-----TGATTTATGGCC
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.66
Offset:7
Orientation:reverse strand
Alignment:WTRWSTKMTTTAT---
-------TTTTATTGC
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:WTRWSTKMTTTAT---
------TTTTTATTGG
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:WTRWSTKMTTTAT---
------NTTTTATGAC
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:WTRWSTKMTTTAT-----
-------TTTTATGGCTN
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

POU4F1/MA0790.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:WTRWSTKMTTTAT-
ATGAATAATTAATG
 C G A T A C G T C T G A G C A T A T G C A C G T A C T G G T A C C G A T A C G T A C G T C G T A A C G T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G