Information for 18-AGCCATCTAACTC (Motif 39)

C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A C G T A C G T C G T A A C T G G T C A C G A T A C T G A C T G G T A C C G A T
p-value:1e-7
log p-value:-1.705e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 29.7bp
Average Position of motif in Background31.9 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGCCATCTAACTC-
AGAGCCATAAAATTCG
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGCCATCTAACTC
-GCCATCTGTT--
 C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGCCATCTAACTC-
CCNNACCATCTGGCCTN
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C A C G T
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGCCATCTAACTC
GCNGCCATCTTG---
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGCCATCTAACTC--
TCACCCATCAATAAACA
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGCCATCTAACTC
GGCCATTAAC---
 C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGCCATCTAACTC
-ACCATCTGTT--
 C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C
A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGCCATCTAACTC-
TAAGCCACTTAACATT
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGCCATCTAACTC
RGCCATYAATCA-
 C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGCCATCTAACTC-
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A A C G T A G T C A C G T C G T A C G T A A G T C A C G T A G T C A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T