Information for 5-CCATTTGCAG (Motif 38)

T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G
Reverse Opposite:
G A T C C G A T C T A G A T G C T C G A C T G A G T C A C G A T C A T G A C T G
p-value:1e-7
log p-value:-1.715e+01
Information Content per bp:1.560
Number of Target Sequences with motif179.0
Percentage of Target Sequences with motif23.19%
Number of Background Sequences with motif7700.6
Percentage of Background Sequences with motif15.69%
Average Position of motif in Targets43.4 +/- 26.5bp
Average Position of motif in Background50.2 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCATTTGCAG--
--ATTTGCATAA
 T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G A C G T A C G T
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCATTTGCAG--
TTCATTTGCATAT
 A C G T T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCATTTGCAG--
--ATTTGCATAT
 T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G A C G T A C G T
A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCATTTGCAG-
CTCATTTGCATW
 A C G T T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCATTTGCAG
CTATTTTTGG
 T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G
A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCATTTGCAG-
--ATTTGCATA
 T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G A C G T
A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCATTTGCAG-
--ATTTGCATA
 T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G A C G T
A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCATTTGCAG----
TNTAATTTGCATACNA
 A C G T A C G T T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCATTTGCAG----
TNTAATTTGCATACNA
 A C G T A C G T T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

MEF2D/MA0773.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCATTTGCAG-
TCTATTTATAGN
 A C G T T G A C G T A C G C T A C A G T G A C T A G C T T A C G G A T C G C T A C T A G A C G T
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T