Information for 4-GGGTTGGCATGGG (Motif 11)

C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G
Reverse Opposite:
A G T C A G T C T A G C G T C A C G A T A T C G A T G C A G T C G T C A G T C A A T G C A G T C A G T C
p-value:1e-9
log p-value:-2.205e+01
Information Content per bp:1.776
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif64.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets53.0 +/- 27.5bp
Average Position of motif in Background51.0 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GGGTTGGCATGGG
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GGGTTGGCATGGG
-GGTTGGCAT---
 C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGGTTGGCATGGG--
-NGTTGCCATGGCAA
 C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GGGTTGGCATGGG---
--GTTGCCATGGNAAC
 C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGGTTGGCATGGG--
-GGTTGCCATGGCAA
 C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G A C G T A C G T
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGGTTGGCATGGG
-NGTGGGCAT---
 C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G
A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGGTTGGCATGGG
--NTTGGCANN--
 C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGGTTGGCATGGG-
NNCGTTGCTATGGNN
 A C G T C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGGTTGGCATGGG
-NNTTGGCANN--
 C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGGTTGGCATGGG---
-KGTTGCCATGGCAAC
 C T A G C T A G A T C G C A G T A C G T A C T G A T C G A T G C G C T A A C G T A T C G T A C G C T A G A C G T A C G T A C G T
A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C